NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316627_100054876

Scaffold Ga0316627_100054876


Overview

Basic Information
Taxon OID3300033482 Open in IMG/M
Scaffold IDGa0316627_100054876 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2454
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3769Long. (o)-82.5097Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036146Metagenome / Metatranscriptome170Y
F059774Metagenome / Metatranscriptome133N
F098941Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0316627_1000548763F036146AGGAGGMTPCRTFKITTSEGKTIALGAISPKQAEHFMLAMRPDIKIAMIEEIKPLPEDLPESFQ
Ga0316627_1000548766F098941GAGMPFLFKAMTAKFYHWGEKLSAFTSDNRLVMSFGSPIASVPITVKELQDFVCTLEQAIDDEPNVKQRIALGSIKHIFQASLKQAQKDHEQIVEEAPTGSDLEEYMLSYARAIKEGAF
Ga0316627_1000548767F059774AGGAGMAFFTDGDYENDPELDWERPQRLNRQLSLQQLEDRLELWKQKHEDMCLKLYRAATGI

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