Scaffold Ga0316627_100054876

Overview

Basic Information

• Taxon OID: 3300033482
• Scaffold ID: Ga0316627_100054876
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2454
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3769
  • Long. (^o): -82.5097
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036146	Metagenome / Metatranscriptome	170	Y
F059774	Metagenome / Metatranscriptome	133	N
F098941	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316627_1000548763	F036146	AGGAGG	MTPCRTFKITTSEGKTIALGAISPKQAEHFMLAMRPDIKIAMIEEIKPLPEDLPESFQ
Ga0316627_1000548766	F098941	GAG	MPFLFKAMTAKFYHWGEKLSAFTSDNRLVMSFGSPIASVPITVKELQDFVCTLEQAIDDEPNVKQRIALGSIKHIFQASLKQAQKDHEQIVEEAPTGSDLEEYMLSYARAIKEGAF
Ga0316627_1000548767	F059774	AGGAG	MAFFTDGDYENDPELDWERPQRLNRQLSLQQLEDRLELWKQKHEDMCLKLYRAATGI