Scaffold Ga0316620_10007643

Overview

Basic Information

• Taxon OID: 3300033480
• Scaffold ID: Ga0316620_10007643
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5585
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3776
  • Long. (^o): -82.5117
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045921	Metagenome / Metatranscriptome	152	Y
F072401	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316620_100076434	F072401	N/A	MLEPVQQTDEPRTLLVVDASFDLGNALAVAALEHGWEPFLAGNAEAALSILPGLLGEVLVLVDLGSAVSRGLALVLALRRNPPPPSVRVVVMTSGQPIPEAVRRSPFVVGAIRRPRHPEEAAALARALLGTADVTRSV
Ga0316620_100076436	F045921	AGGGGG	LPDVTTPTPRRIAGLTEPTVKPLERLAIRLRESQVTLSAWRMAASGPEGAGTLVRVETPGGTLFRGDGWFLGWTQEAMSTAWAALLPPPPSEEPELAQLG