Scaffold Ga0326765_100234

Overview

Basic Information

• Taxon OID: 3300033476
• Scaffold ID: Ga0326765_100234
• Source Dataset Name: Hot spring water microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6289
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.7265
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F080245	Metagenome	115	N
F080247	Metagenome / Metatranscriptome	115	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326765_1002342	F061983	AGGAGG	LKKFVFKVKVVPVKIFNEDGVLSEQEFEQVKKTGVYKGLKVLEIKDLGLDSFWRFMHYYELVAVSEGGGQFDCYYGDVIDVEKLKGVGAIVVKESDAPPVRTMKTLVAKWFNKKLVEEEKAYEVCNTFVT
Ga0326765_1002343	F080247	N/A	MIVWGKLVDCLIDADVNYLNGELFNSQFRVKGKFLAFGNLYTLEKTTPGGGTIQVCVPIDATFMAYYQGMVAIMSFYFRDRDLYANVSLTDPDTIKDFITMSTYYRKYGVSIPNVLDKIMYRKVPT
Ga0326765_1002344	F076263	N/A	MLSAEDLSAILDDLEDICARIPEGVTFHPTLEIHRHYANEEATYIKFDCRNHRYILTIIREGVAKTTRVSSREELFRRLFPEYSPGFTEEIWGGE
Ga0326765_1002345	F081547	GGAG	MPYLRGVFVNFGEETYYLSCGIVNGGNLDTETYTINKPELMMVRMGRDIYIVTSELKLLIPVEPVRVLLNSETSKVYNEVLSQGNEVRPS
Ga0326765_1002346	F087442	GAGG	MMREGLVKAGNLVIDCKPCYIAGTGFTKDDIYVVSEGTVVFKWYDKIAVVTVSEEGTKVNLLNIIDVRFLVERNENCVAIRL
Ga0326765_1002347	F080245	N/A	MIFVWSAKVVLPGFNKEVFVSPALINSYVQITEDVYEVGMFMVPHRSHALLFLPTMVIKVDDELMKNLEQTSIEDLNIPLNTISNVFT
Ga0326765_1002349	F075084	GGA	MDFTSQNPTGKLFRRAGVAMVYARRLSASWYGYDTGVLLERSLRRILKWSINYCRIMKELGLESEYCRRYTVYDEVPCERVSEYDVEVAYSRIIRMIANYNSETVSKLLTKMTEECSTYEVRG