Basic Information | |
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Taxon OID | 3300033475 Open in IMG/M |
Scaffold ID | Ga0310811_10007935 Open in IMG/M |
Source Dataset Name | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13616 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 36.0 | Long. (o) | -78.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005357 | Metagenome / Metatranscriptome | 403 | Y |
F032381 | Metagenome / Metatranscriptome | 180 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0310811_100079355 | F032381 | GAG | MTAAERAELLSGGTAFQGMVVHSESAAADRLMSQVRLCVDFKDGQRVEFSEELANLYQPAPGSPEARRLAEVRQAEQLRHPDRIPKIQLPLSAGERVPVRYDAADRSKIVIDVPALQKRALHDYIQREKKPKSQPTARPGAGIGPPWQVPTHCPNCGAPVDQARASQDRDPHCEFCHQPVPVTPLR |
Ga0310811_100079356 | F005357 | GGAGG | MSQHTARHEPSARSEDEDIAGPQALQPEHKQRVRPRHPVGQPAGDGGVGPDGPDDGEFELAGDNDLSPADLGPADPNATDPDADSGRVRKIT |
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