Scaffold Ga0326726_10000086

Overview

Basic Information

• Taxon OID: 3300033433
• Scaffold ID: Ga0326726_10000086
• Source Dataset Name: Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 87824
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (86.02%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.3286
  • Long. (^o): -76.4792
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000231	Metagenome / Metatranscriptome	1516	Y
F081785	Metagenome	114	Y
F096107	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326726_1000008611	F000231	GGAG	MKAGKPAPTANLMYRCAGPNCGTLKGITDHWWLMWASFAEFNRPVLYLCPWDDEIAAREGTLHVCGELCAQRLQSQFMGNVRENQRSASV
Ga0326726_1000008622	F081785	GGA	MIPIHTPGPTTVSAEALFRLELLLGERVVTLSAVGDIVNQNSGLKIHVLQLAHDTATQETDELSLDQCIVEIGIERLRESLRQTRFRLKTN
Ga0326726_1000008630	F096107	GAG	LAIDSIDEQEQDDPSAAVADMRELCVQFQRAIAALASNDVAALEASTTAQDGLAEKLQSWFRGKPSGHQLSVKVSPSDLRELVNLTKVYSSLLQKALRTTRLRAALCQTYRQHFPAESEPAAATGWSCEV