Scaffold Ga0326761_1000067

Overview

Basic Information

• Taxon OID: 3300033431
• Scaffold ID: Ga0326761_1000067
• Source Dataset Name: Hot spring water microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.EP_P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25061
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (68.97%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.6904
  • Long. (^o): -110.7291

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F075483	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326761_10000675	F075483	GGAG	MIELLAVQAVTTAALAFFVIKLRRELWPMFAMAKSGEVGFWVRTVDVLEVATPQFEASKVVIKVRWLFSEEIHMTYSFRVYDVAMHPDSRHHYVRWKAWLSGDGRYECKVEKPRGLARLYTKTIDVFCKEKEPPKDVVILPSRWRKRRYKRWAS
Ga0326761_10000676	F013155	GAG	MELYQAIVVAIALANLAVTIWLVRLLIPIWQTLRKVVFALDHYDFDKLARQFLGNEKPLAESVSIKVSEKKEEGYKEILITKIYKKPLDAREIQENIVRLTAMELQ