Scaffold Ga0316625_100048996

Overview

Basic Information

• Taxon OID: 3300033418
• Scaffold ID: Ga0316625_100048996
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2032
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3792
  • Long. (^o): -82.512
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021128	Metagenome	220	N
F065471	Metagenome	127	N
F079679	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316625_1000489961	F065471	N/A	MINVGNDNFSLATLDQDGKPPETRISNASHAWNIANHLRLANIGRENKRLRIYKAYKMFPPTGYSKLAEKRLPWQSDVNYGQLGFIVDNQKSSYYDVITERQACCTIKTKYGNEKERLVNSENISIAFDQVIREWPGYLYNTEQDLEEMLLYGKGIGMWDSPLGWMPEHVFLSDLLFPDDIRIDFCNLEEFVRRVRLTPYELYKKIENRAAAEAMGWNVDAAIDAIRFHRAFSNHRKTREDFFRTISEAGFNWSLSVNQKIDLYEVYWREFDGKISKAIILQDYQPIADYINSNIKGAG
Ga0316625_1000489962	F021128	GAG	MKLKNKNLAPVGGWFWRYEIKRGKLTFPAIVYGSTFNSLMQNIQKDYNSNGIQVPENIEQMVEDQICQRQPSDRCWYSDGLGDKIAQAIHTVAATADKVLGTKLERKARSCSSCNRRRNALNSLS
Ga0316625_1000489963	F079679	N/A	MQFPENLDDLGVELFCYAMTRGQYGRSYCTRHNISLSEFKLLSPHEHFINAVKLQWPTEVSIYNRGYTNTQLLRTLEELCNNTDICLAGAASMGKSFPVGLWIYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKCARVQIGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNERVRLALDELPEMELGAITARTNLAS