Scaffold Ga0310810_10102311

Overview

Basic Information

• Taxon OID: 3300033412
• Scaffold ID: Ga0310810_10102311
• Source Dataset Name: Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3413
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Chitinophaga (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023978	Metagenome	208	Y
F049056	Metagenome / Metatranscriptome	147	Y
F083332	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310810_101023113	F023978	N/A	MKKNTILVMSAFMGLSLFAKTPASQSPNPVFGVFAKAPKGGGKVSPLIESKFKNQFGDPAIASWSVVDDVADVQITIATFTEAGEQKEVYYFDDGEIFGIGKNIRRDLLPENVTKAINARFNSGIIQTAYEFKERNASTRYFVRLVTPKHTMIVSANEFGETRVYQKERLKHLFQ
Ga0310810_101023114	F049056	N/A	MKKNVILLSLAFVTLNLTARTPAEGPDPGSAVFAKTTGEIVSPLIEAKFKKQYGPIINVSWKVINDISIATYTDQGEQRDIYYYNDGELFGFGKLIDRSLLPTVVSKSLGKRFNQGTIQAVYEFKSTDWPTRYYVRVVAPGYVVIASATEFGDITVYQKEKLR
Ga0310810_101023117	F083332	N/A	MSKIDFNKLIKDLVSAARDEAAANLSKLRPAGDDDKLSVTLKLEVTISENSTRLYEASQKSSRRLVLLTINDSE