Scaffold Ga0310810_10009163

Overview

Basic Information

• Taxon OID: 3300033412
• Scaffold ID: Ga0310810_10009163
• Source Dataset Name: Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11441
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Pseudohongiella → Pseudohongiella nitratireducens (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041838	Metagenome	159	Y
F053357	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310810_100091631	F053357	N/A	WPAGTVALVETEYVREVSDGNATQQLAVLRMTHRMRVSPHPEGLLVEFDNQKAIAAAGDMTDALGTLLPWWVPRIIVSRDGHVLRIEQTDRVQELVAQMYEPLAKSPSAQSPSALKQLLTIMASGAGLRSLVQDDWDHLVGKWLALPLDSAPVESTSVSTVLNGIPLRSMVRQQMIDRPSCIRDVATIECATFESRSNIEPESLAVLQNYLSPGASDAGVRITGSEKVDRVTLEIGTMLPHDAILTRTLQSTTQLSGRTVLTQNVQRRAVRFTYVKEQ
Ga0310810_100091632	F041838	GGA	MVTARRNALALAGVVAAAGAWYLWPQHDIPQLVAGPTSVSYDADTIRLTAVVKIRNSGDRPIVASMTHDVFVDSQKQALNDRRQPQPWRTEVGSKQENPVTFILDGETAAAVWNGVRLMEVTIDAVYGDGQGAKPNCHFSFMGRFYPQLKQIGTVSNGTSPRACRGR