Scaffold Ga0316605_12129478

Overview

Basic Information

• Taxon OID: 3300033408
• Scaffold ID: Ga0316605_12129478
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 546
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Soil Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3777
  • Long. (^o): -82.5117
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022055	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316605_121294781	F022055	N/A	DHFVRLLDLSPSDLQRCASDTDGHLVPRLRAVKVPVSIFVDSVDEYFNKHVETGGSRPSAAGELDPNIWYYSQLGLVEVGYQLRRINHHLKVYAAVRKEAYLRLPESTVMSQQYQGSAVDIVYSIESLCEIFANNIRREPASRLVFPDRVKDDPFTAFFGLTHVVHSFTGERENVFDYVC