Basic Information | |
---|---|
Taxon OID | 3300033407 Open in IMG/M |
Scaffold ID | Ga0214472_11055955 Open in IMG/M |
Source Dataset Name | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 715 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 42.9888 | Long. (o) | -108.3994 | Alt. (m) | Depth (m) | 175 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001699 | Metagenome / Metatranscriptome | 649 | Y |
F062540 | Metagenome / Metatranscriptome | 130 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214472_110559551 | F001699 | N/A | MRVFLRHFLIALLPLVFGLAASWGFALSQDSCGRLVGPVFAPKCHWIQLEYQIMFMMAGTALGCVVAATLGSWLELRRRPAVQRADPNQG |
Ga0214472_110559552 | F062540 | N/A | GRRGDGPVEDRAGAVNAPWQAYVALGWAIVGPPLLVYAATRVRRGQVPLHAAMMISAVVVTLGVFISFGFVPHPSPRRPALMALPIFKIHLVCALTAFAGMAWQLTSRAVPRLRALHRHTGPYVVLVWCLALVTGIYNFVFLYVMGTP |
⦗Top⦘ |