Scaffold Ga0214472_10747173

Overview

Basic Information

• Taxon OID: 3300033407
• Scaffold ID: Ga0214472_10747173
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 885
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060678	Metagenome / Metatranscriptome	132	Y
F073743	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214472_107471731	F060678	AGGAGG	MSSPSRPDGRPAVHTLELEASLRDVVEDFARHSRKNSEAIDVLAHALKAVHQDLQQEKTRSRVLGTRLKRAEGSVARLTRVVDALRRQGWVQ
Ga0214472_107471732	F073743	N/A	PPPVVLGYGAARERVPREGAVGSDVIRIFVDSWAVVWSVALLVGYLAERTPWPSLKVLRGRRAANLMLLTSIAAVLGLTLAGAREPSAILAAWAIVTSSVKLLYDSFGELW