NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214472_10151250

Scaffold Ga0214472_10151250


Overview

Basic Information
Taxon OID3300033407 Open in IMG/M
Scaffold IDGa0214472_10151250 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2274
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)175
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011832Metagenome / Metatranscriptome286Y
F035819Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0214472_101512502F035819GGAGGVTSRQEPRATRKREPKPVFATRTSEPANRSQDSRLCLIGVKVDAALRREIDAYAEAHGVSRSRAAGHYLAIARETIHEREGVPAGRADELMEAVDGLRAAVDILGPPTFGMLRLLAHWASQGGTVKVSEDELLAELRSVGADEWEQAVAEAERDLQETSGGTAHKGRH
Ga0214472_101512504F011832AGGAGGVARRRIQPKLAVELETVSLRLPVRLVRAVEQYAKYLGGSSDRTHVITQAIEIALAQDADFQKSLDGRHAAPAPGPVRATA

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