Scaffold Ga0214472_10016396

Overview

Basic Information

• Taxon OID: 3300033407
• Scaffold ID: Ga0214472_10016396
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7679
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Labilitrichaceae → Labilithrix → Labilithrix luteola (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080997	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214472_1001639610	F080997	GGA	VNAEAGPVLDRLIELRVFGRKPISDVPPYSTSDSAADVVVRALARPPWRWMCVQSGKEWTFHWRRPLENLDPDASTISRYVNLITVNAPTRPLAICLAALKFVGPIGGAPEARTTPPGVPADIGKPPGPPENRG