Scaffold Ga0214472_10004304

Overview

Basic Information

• Taxon OID: 3300033407
• Scaffold ID: Ga0214472_10004304
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15024
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 175

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011832	Metagenome / Metatranscriptome	286	Y
F021078	Metagenome	220	Y
F031298	Metagenome	183	Y
F078364	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214472_100043042	F078364	AGGAGG	MTALFERLHLSQDDAEARLKRNLTGDPTRGEIALLAALNANKFDDVQRQLELDVNVGPDLRELVTEHMKKARARWETRKAWSVTVPLPVWEEYAREAKLTGRSITECLAAAISRDYQRRRGSVEPLETLDQDVRAFHATAAQLLQEARQIIERVGPLNEIGMRLARIEGAMGGRVGR
Ga0214472_100043044	F021078	AGGAGG	MESKDGDVGIRLDTSLQKDGDVGIRLDTSLQERIGAYAARESMTPGEALSALLYLGLEFAERQRTGLREDIEDLQREVRDLRQMVDVLGPAALGTQRILSHWASQTGGLRVSEDELLAEGRLVAEEEWQGQLAERGLFSPGALVGKPEA
Ga0214472_100043048	F011832	AGGAGG	VNRRRIQPKPAVELETVSLRLPAQLVRAVDQYAKYLGGSTDRTHVISQALEIALQQDAAFQKALNARPVAPAAGPVRATA
Ga0214472_100043049	F031298	AGGAG	MVRGLRVLFSPNPASRMLYSYRVPESGARGTVTAARTASGLRTYPDGPGGGLVYVEWDDGLVCGVSMRDLKLEPAEDERPGRPPAAGRI