Scaffold Ga0326727_10325584

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10325584
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1485
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011724	Metagenome	287	Y
F042698	Metagenome	157	Y
F057055	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_103255841	F042698	GGAGG	MSIAVSSANQDLVVDNRGYLPALATLDVTGMTAAATNTVPHGLPRIPRRVWFTGIASGANAPACSLDTSSVAAGFDATNIYIFAPTGVTSVLVHVEY
Ga0326727_103255842	F011724	GAGG	MSYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIDDCKARIRGAFLARLIDPDTLALTADAANFLRALNRDGAIADLGDALQGDITLQPSEYSLAGSHRQSFERQINEIKEGLYDALFSVLARHVEIEPLLGGAAGGETDRSTAFDRGEDKAFSKNQTF
Ga0326727_103255843	F057055	N/A	MWTSYYNAGLSKQVIRQLLAVVNRDIQAALDFVSGVPGSYAPFAEYDLALLPVQQFPAILLTPDTVTFDEEANCTLHQT