NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326727_10323057

Scaffold Ga0326727_10323057


Overview

Basic Information
Taxon OID3300033405 Open in IMG/M
Scaffold IDGa0326727_10323057 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1493
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039920Metagenome162N
F044872Metagenome153N
F062380Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0326727_103230571F039920N/ADGPEVLALNLNIVNRNVEFAMIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPGAAMQKTLQAVLARPAKPKFRRVAPEVNHNSVRCIGLDKLKF
Ga0326727_103230572F044872GGAGGMNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISETLFTVALNKDARQTVSCYLVQIYANHLFISDPTSEFGTCMRIARREIDELLSFTVLDRIAKYVWGRRDQFLDLWTRFAEDMEAYPQSSTHILQRVVVDTVQLLEAA
Ga0326727_103230573F062380GAGGMPGDVNDFECNDFERLLFADPGSTGTCKLIIAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV
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