NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326727_10271416

Scaffold Ga0326727_10271416


Overview

Basic Information
Taxon OID3300033405 Open in IMG/M
Scaffold IDGa0326727_10271416 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1716
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007294Metagenome / Metatranscriptome353Y
F053728Metagenome140Y
F088082Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0326727_102714162F007294GGAGMALTLAQLQANLDAVNSAIGDPTLRVRFPDGREVMYRTIDELRKAKAEIEEDIREMSGGTGGRVRLAQTKRGDGPIGPTIYDRW
Ga0326727_102714164F088082AGGAMSIPEIADALERAQRQGAEKDQPEGSRFAVFSDTALQTMARALRLASAERPDVETFEGRESR
Ga0326727_102714165F053728GGAGVTILDRIGRLVRPFSRDSGPKSFMTLAKEPRPKSKLPTAKLYVIETDFEISPDSYNNLQAMLDEVREKYGLDFLILEPGFKLKRFDDY

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