Scaffold Ga0326727_10271416

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10271416
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1716
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007294	Metagenome / Metatranscriptome	353	Y
F053728	Metagenome	140	Y
F088082	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_102714162	F007294	GGAG	MALTLAQLQANLDAVNSAIGDPTLRVRFPDGREVMYRTIDELRKAKAEIEEDIREMSGGTGGRVRLAQTKRGDGPIGPTIYDRW
Ga0326727_102714164	F088082	AGGA	MSIPEIADALERAQRQGAEKDQPEGSRFAVFSDTALQTMARALRLASAERPDVETFEGRESR
Ga0326727_102714165	F053728	GGAG	VTILDRIGRLVRPFSRDSGPKSFMTLAKEPRPKSKLPTAKLYVIETDFEISPDSYNNLQAMLDEVREKYGLDFLILEPGFKLKRFDDY