NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326727_10090882

Scaffold Ga0326727_10090882


Overview

Basic Information
Taxon OID3300033405 Open in IMG/M
Scaffold IDGa0326727_10090882 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4128
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y

Sequences

Protein IDFamilyRBSSequence
Ga0326727_100908822F004301GGAGMTAMQFSLFNAQPQVATANTEPSVNARNAKRQLDSLRSQLATAQADLEDVNYNLSVVTMHQRASREGKIDANWWDAAMRFGMLDLDEQPAYRLGSYPVKVMRWIRHLIFTLHAERRDVRLAIAELEPKVATLSQIIGDAIK
Ga0326727_100908823F003764GAGMQIQEDSTYVLDENPAALLTGAEIDAAALHRCLKIARLWSQSSTLSQSRHDEMIEEKRRIADLYAATLLEIGCAFGIETADELQVRIEAACILDPRECPPAEQGFLFPIPRDSANAASPARARK
Ga0326727_100908825F003942GGAGMQGLRLNPTIHRYEDVELIEVHSEYLECSFLVAKDEWEAGKTLLNLFSPLDGNVLGFPHYRLHRDNISAAGPKLPDGTTAQPGMAEAIELQRQAGHALYADHLSAMLYGTGPSPARS
Ga0326727_100908826F003389AGGAMEITVWSVAADDDNGTYASVHETELAAYRRLIELTVDSDDKDQVAKAEAFIEAEDFDGLDEWIHAEVIEPLNTYSVDQHKLNFSAASDPAPADESKHITRRELASVLHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLSPTEIDDLCERLNMGLCN
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