Scaffold Ga0326727_10053479

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10053479
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6274
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017934	Metagenome / Metatranscriptome	238	Y
F074173	Metagenome	120	Y
F082600	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_100534793	F082600	GGAG	MTTINIVRYLAITLLFLIAGCSHHVPQATVEVIDTSFSITPRAEKAALGAVEDQIGHMQRGDVLILIPITGDAANDAGGRILRLSAPIQRETYDTDLRRFQAAARKQFVAWTASLDSHQSRTDILGALDAARQEFAVLPKESSRKLIVVSDFIEDDGTYSFVSARSLTNPTSARQLAAHLREQHGFTLLGVQLCLGHLESSDFAPLSAQRKEAVSAFWTAYFATGGEPTEIHFDGMGILTDTERGCFGGKR
Ga0326727_100534796	F017934	GAGG	MTETNKQPQPPDIDEAIRLRVLDRAKAINTKLLARLGTVADDLDVGGHLAALGGLDGLERQIDTMRNLLLLLR
Ga0326727_100534798	F074173	AGGAGG	MTTEWNAEEIRMSGFENGAKPVDSLRFPHDSLGQSYPQHYPQVRETLGEPLGVREVARVIGCSAWTVRHRYLSQGLPHLRSGPMGKLIFFRNQVVQWILQQQKKGGM