Scaffold Ga0326727_10049701

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10049701
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6631
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002623	Metagenome / Metatranscriptome	542	Y
F008315	Metagenome / Metatranscriptome	335	Y
F017199	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_100497011	F017199	N/A	AMSFRGRRRNVDAHVQIQVRDADTFIRLHLSNSESIDVTPHHIFTLADGSPMRAERLCLSDILVGRFGRITIRQIETIVEEGKKVILTCEPEHQFFAGRYSASVLTHNYTYSS
Ga0326727_100497013	F002623	N/A	MLIREYTEGDLDALRQMHARQGFDYAFPDIADPIFLSKLVVEDGDGHAVMASLARLTCEIYLLADPEAGSPRERFARLIALERAGERDLLVRGLDDAHAWLPPPIAKRFGRRLESFGWVRDDVWTPYCRRLR
Ga0326727_100497015	F008315	N/A	MRTFINSYWCTFALASLAQFVLFLRWLYRRFRDDEVNRAFVRDMATNHLPHIYDLLVKLCDEQGIEHGPPPPIRWLDLNGRGRDN