Scaffold Ga0326727_10034986

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10034986
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8669
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006278	Metagenome / Metatranscriptome	377	Y
F017965	Metagenome / Metatranscriptome	237	Y
F029198	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_1003498610	F017965	GAGG	LTDMSEKITRRDALYLFACYLEWRTQQNLAAYHDLLAALDDRDGNIRRLAESLLRRSSPRPERIANSESW
Ga0326727_1003498612	F029198	AGGA	MDSMANSRAVRAGGEVIVLHCWACGTAHCVNQESCVPGGLPHMVCSNSSCRMSMFLVNELVLDDKTRKQMTNSELNARVTTSRFWR
Ga0326727_100349869	F006278	GGAGG	MFRAEIQWLASGPTLKLEGRLVADWAEQAQHLITKDVLPKGLIVDLTEVSYVDPVGEQMLKWLASTGAMFAPGSVYGFAICDRLRLPPARSIAGRRKRHRNKAERPTVSHSPSIEAI