Scaffold Ga0326727_10029910

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10029910
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9772
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011872	Metagenome / Metatranscriptome	286	Y
F017747	Metagenome / Metatranscriptome	239	Y
F061220	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_100299102	F017747	GGA	MPLPGTTPANSHLPIPTLSSSKTFVRKSVGSILFRWRHSVCLLMVAILPAAVQAQETAAAMLRSDGVGVLVNRNPAPASIALFSDDLIETQKTVIARIEASGSAADINAETVVQFEGNELVLDHGSLSVNTSRGMTVRVGCLRITPANNTEWTHYDVADVNGKVNVSALKNDVNIDERSGSLRQAKQSTHSHRVTVREGQQKSREENCGAADIRQAGSVPATQALLNSPYAIAGGIVTIGVLTCWALCRSGNPISPTNPRE
Ga0326727_100299104	F061220	GGAGG	MRLACLFCISMALAGISAAQDTNFSAGPQYLMTSGFSPLFNRPIATPSVSLEVPLPEIQSLPAIGPVVENEPFTTNPELPRQPDLFPIYYGYPMPSVIEITSAEPPRALPASIVDAGVTGFTDAQSLRERGYGVPLAETAAFWKAHKPHAPRVYTNADVQRLRPS
Ga0326727_100299105	F011872	GAG	MKAEPNAGKSKDNLKVEKLSLLILTLCIVVLVYVLVVKPF