Scaffold Ga0326727_10002246

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10002246
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67232
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022135	Metagenome / Metatranscriptome	215	Y
F040976	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_1000224623	F022135	GAGG	VSRNLSRESRVESRKVLNVSTLEQYVILSEAKNLCSCFVLVLRRFFASLRMTAPGGDITMKKRHVKLAVLLLPLCLPVFATDKKDLSERYKEKYLVVLRDGLAVGTCADLPEIPSGNALDVRIVGESAGFFPQTGASAAMTRCGEIIPEPLHKGEIVFARFTWFRRLRGGYFTITVQNLAPHQVKRGGGASRHEHLKYGRANLIFETSDPQDYDAVASLVEKWLRPFNTRAEAAQFGNTATGVYVKEVKLGMSYAEVEAALGLPQTRVDLGAKVLYKYKDMTVEFHDGKVTDVR
Ga0326727_1000224647	F040976	AGG	MVARSVVVGWAALVALSYLAERPLLLLIAPVVGAHWVATASLALDCLKLAATGAAIGRLHRQAPLPQVLAFAATLCLLNFEALLPLDVPWLIRLAMDAVNDARYWGSLATTAAQDVLLFGSLIAGGLLSRRPQKPLTLFDESPR
Ga0326727_1000224650	F040976	AGG	MVARSVVVGWAALVALSYLAERPLLLLIAPVVGAHWVATASLALDCLKLAATGAAIGRLHRQAPLPQVLAFAATLCLLNFEALLPLDVPWLIRLAMDAVNDARYWGSLATTAAQDVLLFGSLIAGGLLSRRPQKPLTLFGESPR