Scaffold Ga0326727_10000135

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10000135
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 317987
• Total Scaffold Genes: 248
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 169 (68.15%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000677	Metagenome / Metatranscriptome	940	Y
F001303	Metagenome / Metatranscriptome	727	Y
F001558	Metagenome / Metatranscriptome	671	Y
F001596	Metagenome / Metatranscriptome	666	Y
F001643	Metagenome / Metatranscriptome	659	Y
F003670	Metagenome / Metatranscriptome	474	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y
F020757	Metagenome / Metatranscriptome	222	Y
F033120	Metagenome / Metatranscriptome	178	Y
F089724	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_10000135107	F020757	AGG	MSYRTFCVGTRRLIVIVSLALGVQIALASNGPLVTGSYQVVQNTSLGPQAEIKMRIHLVNHGALSLFIQRMTLRDNSRPSKGGTSACAVTLPAHASADTTQEFTIPRSEYEQWQKGLRPRFILGLSGPGNRKSTAVVRLDRISGQEAK
Ga0326727_10000135144	F003670	N/A	MQNNEYQSVKVRIATLLFLLTVFDPILLPPAAWARSHTHPAPQATPSDPGYVFALAAANHFLHAWQTGDLENGMVLLSDGIRHSQNADKLELVFSNASNRAFEITRGRGHPGRYTFPVVLVTPRGSHVTRKFSEIILVDTGKNDWVVDKLP
Ga0326727_10000135170	F033120	GGAGG	LKREFRFAIVLSFACAALALCPTAAQAQKVDLAFGVSTVEAPAANSNGPSLTGGTYTGFSGDVLPWHNFGIGAEIYWRTTQSVYESVIYGPIPYRPLFLDVNGIYAPKLASHTYLELSAGIGAMDTRQYCSVCGNGYNTNYTSDKHFMGDFGAGLKIYPKGGFFIRPEAKLYVVANNQLFSSSYSTRFGASIGYTFGGH
Ga0326727_1000013526	F000677	GGAG	MKTKLFLSILLLSMAAQAQSFTASSSTLPDAPSQQPFWTVENKINVSILAGLVATDAVTTQRGLNEGLREMNPVMRPFVTRGAAGEAVGSALGFGAGVGAVYLLHCSHHYKAERVAMRLIVAGESGFVANNIIAIR
Ga0326727_1000013530	F001303	GGA	MDRESRDSMEDIHLRILRVTDDLGVIQRELNCAAMQAPTDPELMEALADPPEMESIQALKAALDQMRHFLWFYTQVVTSDSEMGEKFRETLRQDGPAPIPEMEQQFQNATDAIMLRYLAESKFRKPN
Ga0326727_1000013564	F089724	AGGAG	MKWPDILERPSHRYATVEDVRKVFADYHDALHWLAAFLVGDKLALACVIDACNIAERQGPVFHEWLAHWAARATLRCALQMQRADIAKLAPTYERFERVDEMRSPLSPEDLQLLIEESDILPARLDVLCRFVLVMHGIAKESCEEVAAQLGVSEKAVERAYCAAFDTLHLTSERVLGNVGIPVVLSQ
Ga0326727_1000013565	F001558	GAGG	MLRVQTQESDGALICRLEGRFTGKGAEEVRTLVTRCDSNLELVVDLTDVMFIDAIGEAVLLFIKRLGTEFVAETSYSRDICERLQLPLIGKQERNAHVSSDSDGNGHRPRRR
Ga0326727_1000013579	F010114	GAGG	MIIELNDDETRLLYNALLEQAQEHFRYANTSEVARRLYKLATRFGRAQLEKYQT
Ga0326727_1000013580	F001596	AGGAG	MYWFHSSTTAVDARACASPAEIVACFQDRRNVLRRLAFLITGDRATAEQAVANACEMTLQGNSPFSDWLFEWAKAATIASAISHGTQAIRICEATNKDRRCPHVEHVSQGDAEERAANLDFILGADAQKLIAELDPLCRAVLVLRVAIRSSMQDCALRLNVSRAAVLGANCHALTWLHDGRVKPAEENHDASHTE
Ga0326727_1000013581	F006278	GAGG	MFRAEIQWLASGPTLKLEGRLVADWAGKAQCLVTKDVLPKGLIVDLTELSYVDAVGEQLLRWLASVGAMFVAGSVYATAVCDRMRLSPRQRISDRRKRRHGNNEVQSLN
Ga0326727_1000013583	F004823	AGGAGG	MYATKAMNGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGHKSDLLLNQRDCEWLNPNDRSYRREALHA
Ga0326727_1000013592	F001643	GGAG	MIGDLMNIPTDTLIDMLYIILAGDSVIDASDAAEMELIDRELQRRDGEQRWSFQAGTERSAISS