Scaffold Ga0326727_10000080

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10000080
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 411462
• Total Scaffold Genes: 360
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 164 (45.56%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037652	Metagenome / Metatranscriptome	167	N
F045016	Metagenome	153	N
F063287	Metagenome	129	N
F064316	Metagenome	128	N
F084004	Metagenome	112	N
F102365	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_10000080230	F063287	N/A	VIRALPQQRNRVIVSSASRNQQFTGVNWNGTSTRPIFALVRTQSGERPLGAEGYDLLGHEGRHAAYGDRKLFRHAIDSGIDQANELLFPGLVPTMGAGLLAIWLVRKSGEQLTFKDTLKIKELILSQPELLNDWCEVENDLFNPENRSYRVFAEPDPAVLKRIVKAATQS
Ga0326727_10000080234	F102365	AGAAG	MLKWLFRQAAPAPPEQQGEVRRRLAAARRLVQQQKQGKDPPDIPSPGPPGSSAREILPASEPDAAISYRLPSFPAERSTLAAALESILQGRRVSPGLFTQLYRGGFVFKDPHGRWAITEMGKGLIEQNKLFVPDRCLVGGVECARGWNK
Ga0326727_10000080304	F037652	N/A	MDPMPYTHFWSEEPEAQRRAWRPTDEVRRRLMRLWVIQALLLAAIVLVAGALTRESKRVPPIFARLPNGVIFETTTGDLQMDRLARTELVNNVLQILYYQEGSFNYLATVRQNVKPQLLGRFRAEMQNASQQTNSTVYLNVVETFEALNAPAKGFDAVTKGVLSKRSNQESASAPIYIRTRWLLAGDRYLLSRVEEIRPGDYYELFLAEKERLKKLSQQELERELGVRKNQEIPLPKRNQLF
Ga0326727_10000080305	F064316	N/A	MLGNAQEEASLEVTDPKAVKPARKVGALKMLLRQFEATGNPPLQGEEVLPPKLVGDGNYHWYPLAWLRWLAKWERLKTLVLVIILLGLLAGYGLIRQRRSCQVTLPEPSTEMLLKAKGFDAFNQNQAEAFILFVANAANQASIEGMPNLNLLEGSIDSAIYLRLQQKGMSQQLKNILPADFPIYTLYISEVTRWRYNPATRIVSACVKGFRLSHTLSGKSGMEPYRAQLEIFWEPMSNRNKWGYYVQRLDEFYGAAAQAYDAELKTRDRTGA
Ga0326727_1000008033	F084004	GAGG	MDCGHKKMMQNGQNPAEGFTMERCMRITGAILILLAAGVLAARAGNDSLEFVYNGFITRFAEGNSAWKTEITLGADLNKPPPPPYRLQYHDSLGYYTYRPKHWSELNDYEQFALRNDPRLPDFVREHALSLRNGQWSALAAASKAKPLVPVAGDALSVDSQNAGVLTPEGENRWGYRFEPGDLLNSKPLRLVEVAP
Ga0326727_10000080331	F045016	N/A	MGKRPTRGNVRRGAGVGKIDAMTLAIAQPPVVTGASLVSAACRKYQEAVGKFKRVEVEWQTLPTQEAVMLVVETQGVLRETRKLLDQGTSQMTGMNSPEWREATGQTTRDEVAECLKDAHDLGNRVDDLLAGCDRLIETCLAHQETCERYQTGKALCIVVAVAIFTIGVALYFLLR