Scaffold Ga0326727_10000059

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10000059
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 467041
• Total Scaffold Genes: 406
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 261 (64.29%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000780	Metagenome / Metatranscriptome	895	Y
F001021	Metagenome / Metatranscriptome	804	Y
F001355	Metagenome / Metatranscriptome	716	Y
F001734	Metagenome / Metatranscriptome	644	Y
F003010	Metagenome / Metatranscriptome	513	Y
F007996	Metagenome / Metatranscriptome	341	Y
F009619	Metagenome / Metatranscriptome	315	Y
F009823	Metagenome / Metatranscriptome	312	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_10000059180	F009823	GGAGG	MRPYLLLIAVVLMAVAAFGQQPVPRPGPGFYGYGPFIPLVTTPEISLQTVSPNPVGATNATTGLIAGATNATLSEIQGSTSSVYTEAVWYQGGAPLTTSQVHLWPEPLGREGRVMHEPPAFEERSREERAPRQEARAVWMYYTGAEHSSDAALVANQAKGVRKATHVPYNNDDVKRQNEKNGTVTYRGKTEKM
Ga0326727_10000059227	F009619	N/A	MAEFSILTNRKRAVVALVHSVAFLLIAVRQLMAANPAAGIWVASEVSKGTWILCAIFTVVSSILLWLLLISRGWLEKFYFGFCTISATSGLIRTAAGDQAFHAGLYIRVVMLISAVLVGLLIVRVHSRNQSRLQPEYAEEAN
Ga0326727_10000059230	F001021	AGGA	MTKAMLVGVFSACLAFAAGIAVAEKVHDWPDLAAAHNHTQEAIKEMDHARAANHYDMAGHGAKAEEHLRAAERELHEAIEAARMAH
Ga0326727_10000059243	F007996	N/A	MVVLSGILMIVAYMAGTHHATVAYAGPSTQAVVPKSYGKLVAAIPDSIGTGLVFEDAEGVIRFVSVNGMKEGELARYDTTPTHGGIPRSYGHLVSAVVNNGATGLIFEDAHGVIRFVTLTGVTERELTRE
Ga0326727_10000059246	F001355	AGGAG	MHSLMIDYPITKRLPCSVCGLDTFRRKGWFLVVENRWLDRLKILSWHSSLAVQKDMKSVCCRQHLKTLISHWLDQASLRLPPGYNPPLPISSDPTLTDVDLGPNGVGLLVGELAVHRQSFSRVWSGSPETLECILDALLTVGAENKPHALEFQLFGSPHSPHGLSLQ
Ga0326727_10000059348	F003010	GGAG	MANSNKKSLFESIPMLVLLGLLAGAVGGLGLGLIQTRAASSSATTAK
Ga0326727_10000059351	F001734	N/A	MPSRFPNLWLLLPCAVLLCSLAVVAQDDSPSLGDIARNLRKSKAQQAPPPQTTAPARTVIDNDNLAQVMEDARKARPVDKDKTVFSIDPSGNTLKVSSPDATCSLSFNARASSLLIKPVLIEDLPLTDLLKLDGPGSIQNENLQLEVFNGTDWDIREITIGLTLERGAGDTASRGVRAHIIPAAQGMAPNSVKRHSDVTLLYHLKATAKPFSTTSFRENIGITPSPDEDWRWSIVEAKGIRPSQPQPAPASLRAPLFATPAQVAPQR
Ga0326727_10000059360	F000780	N/A	MDRQVKLKQPAQAELADKTGAKKSRRPDHLMCRTPLWGVAGFVGCAYFAWISFSHVIRNEFEWPHDFWTAATYLVWILLLAGLALDTRCLRERLFFGVLVVNFMVGCGLTLWSGIPSADVRIARIGTGALWTLAALLSLTTLRGSAEAQTHD