NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10342904

Scaffold Ga0326728_10342904


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10342904 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1323
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F007120Metagenome357Y
F025427Metagenome / Metatranscriptome201Y
F027079Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_103429042F007120AGGAGGMKTLIITISVVCAVVAYYFGLRYFSGRDLGFTPAKKYVRNLAVNLLHTEVTAAREAGATSATTTEQAA
Ga0326728_103429043F002761AGGAGGMTFTPSSTSSFAAGAVFWSMVWAGLGKLNELARFVGLKRYKPRESVLRWINSHKVVALTATEVVNYSVHGISSPLGVTFALGGTLVNLLMVTFIVPIWCRLSNLESQ
Ga0326728_103429044F025427AGGAGMQPGEMEELLVSLETCPIQKKGLFRRMLKLCWKKLLFIALMLVLPGGLIVLFLCVTAWALNWEHEMTAYMDATYKEWKEEHDIHSE
Ga0326728_103429045F027079AGGAGVIKAFLNLCLILFLDTLAYMVAIVAAAAVAWAAFWGARWVLAALQNVVTALKARQRKKEMHAHATR
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