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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033402 Open in IMG/M |
| Scaffold ID | Ga0326728_10121255 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3004 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002761 | Metagenome / Metatranscriptome | 531 | Y |
| F003859 | Metagenome | 464 | Y |
| F016632 | Metagenome / Metatranscriptome | 245 | Y |
| F025427 | Metagenome / Metatranscriptome | 201 | Y |
| F027079 | Metagenome / Metatranscriptome | 195 | Y |
| F028392 | Metagenome | 191 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326728_101212553 | F028392 | AGGAGG | MPNTIAVIHLPEALRNGNSALVKLAGKVDSFSLVLQRTPECQLKRQIEKEYHAMVFATRKEVRKYCPRYRYFAGEGILDFSTDCASGQLEPGDLGKPPQPKRGRLCQQCCFYLGEPEEQSPGTTLSETLEALVPAT |
| Ga0326728_101212554 | F003859 | AGGAG | MDELNSSREASRCGMTVAAYLRPVTGLYKSVKLSWNWRRLKWTLAAASDAAQGHEANGARPGSQEFKTLYNEVAKKVQEYSRESGDPIGTLKAKLPALCAIERLANPDPGVPQNKLGLTLGIIITTALGSVGLGALIGLATGIAHWIAHLFA |
| Ga0326728_101212555 | F016632 | AGGAGG | LTGILEVFALAEIGSGIGFLASWRNKVLKAKVNFFRQPNSRPSPFDKVLRAKVGRAFTRQDRLRLQLADGLVNLIRKLVQYEAFRQVVRGLALAHSPMRKALRKKGEKPR |
| Ga0326728_101212556 | F027079 | AGGAG | VIKSFVNLCLILFLDMLAYMVAIVAAAAVAWAAVCGARWILAASQNSVMSLRARRTKKEMHAHATR |
| Ga0326728_101212557 | F025427 | AGGAG | MRPGEMEELLASLGTCPIQKKGLFWRLFKLYWKKLLFIALMLVLPGGLIVLFLCITAWALNWGHEMTAYMDETYKKWKEEHDVHSE |
| Ga0326728_101212558 | F002761 | AGGAGG | MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFAGFKRAKPRESVLRWINSHKVITLTATEVVNYSVHGISSPLGVTFALGGTLVNAFMVTFIVPIWCRLSNLESH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |