Scaffold Ga0326728_10078450

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10078450
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4270
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Cohnella → Cohnella laeviribosi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F010071	Metagenome / Metatranscriptome	308	Y
F016632	Metagenome / Metatranscriptome	245	Y
F028392	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100784501	F010071	GAGG	MTRLANLVLSVGETLFHESTRLMFGIALGAAKELLGTPQPLGSSQLALPRALQRKAVDGALLSGPRTDREYAKFTLRKGLPTEQRPRVMAVGNEPHSVDDFNGVIEEGYGKGEKRLLYAGTGVVKVGNSGRLGRINVHAHKADKAGLHYDFVA
Ga0326728_1007845010	F028392	AGGAGG	MPNTNAVVHLPEALRSGSSALVKLAGKIDSFSLVLWQTPESQLKRQIEKDYHAMVFTTRKEVRRYCPKYRHLPGEGILDFSTDCASGQLESGDLGTPPPPRRGRLCQQCCFFLGEPEEQSPGITLDGTLEHLVPAT
Ga0326728_100784503	F005112	AGGAG	MSLIAKYKLFWAACIATLCGLAFWKNSKSYPRKSRLWRLGKSVIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNRIMQSTGAFASILAVSHLAGIVFEAVAVFGVFAVDLVTGQVVARIDKRERNILAKAA
Ga0326728_100784504	F007120	AGGAGG	MKTLMIVLPAACAVVAYYFGLRYFSGRDLGFTPARKYVGNLAKNLLHTEVTAAQEAGVSPAA
Ga0326728_100784505	F002761	AGGTGG	MVFTPSSTGSFTAGAVFWSMVWAGLGKLNELVRFVGFKRAKPRESALRWINSHKVIALTMTEVVNYSVHGISSPLGVTFALGGTLVNAFMVTFIVPIWCRLSNLESH
Ga0326728_100784508	F016632	AGGAGG	LTGILEVFALAELGSGIGFLASWRYKVLKTKVNYFRQPNNRSSPFDKVLRAKVGRAFTRQDRLRLQFADGLVNVIRKLVQYEAFRQAVRGLALAHSPMRQALRKKGGRSW
Ga0326728_100784509	F003859	AGGAG	MEEFIPKEGSMAEGVRVADYLLPVTSLYKSVKLGWQWRRLKWAVAAASEAAQGHEANGVRPGAQEFKTLYSEVVKKVQAYSHESRIPIDTLKAKLPALCAIERLANPEASVPQNRIGLTLGVLIACVLGSIGIGVLIGLGAGMAHWIAHLFA