Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10062150 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10062150 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5149
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

5149

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1006215010	F004817	AGGAGG	MPNTIAVVHLPEALRNGNSALVKLAGKIDSFSLLLRETPEGELKRSIEVQFHSMVFATRKEIRKYCPRYRSLPGEGILDFNTDCTSGQLEPGDLGQAPPPKRGRLCEKCCFFAGIPEEQISEMTAIEAPRDLLSVA
Ga0326728_100621502	F005112	AGGAG	MSLVTRYRFFWAALTAALLGLAFWKNSLSYPHKSPLWRLGKAVTDTGLVVLMVIYAPALLLMYVVIWLTSPFRNKIVQVSAAFASILAMTHLAGVVFEAVAVLGVFAVDLLTGQVVARMEKRERNKLAKAA
Ga0326728_100621503	F007120	AGGAGG	MKTLIIILSVACAVVAYYFGLRYFSGRDLGFTPAKKYVRNLAANLLHTELTAAREAGATPATTTEQAA
Ga0326728_100621504	F002761	AGGAGG	MTFTPSSTSSFAAGAVFWSMMWAGLGKLNELARFVGFKRAKPRESVLRWINSHKVITLTATEVVNYSVHGVSSPLGVTFALGGTLVNAFMVTFIVPIWCRLSNLESH
Ga0326728_100621505	F025427	AGGAG	MRPGEMEELLASLGTCPIQKRGLFWRLLKLYWKKLLFIALMLVLPGGLIVLFLCVTVWALNWEHEMTAYMDETYKKWKEEHDIHSE
Ga0326728_100621506	F027079	AGGAG	VIKSFLNLCLILFLDMLAYMVAIVAAAAVAWAAVYGAKWIFAALRNSVMSLRGRWRKKEICAHATR
Ga0326728_100621507	F016632	AGGAGG	LTGILEVFALAEIGSGIGFLASWRNKVLKTKVNFFRQPNNRSSPFDKVLGGKVGRAVTRQDRLRLQLADGLVSLIRKLVQYEAFRQVVRGLALAHSPMRKALRKKGERRR
Ga0326728_100621508	F003859	AGGAG	MDEQNAPKDTTLERTSIPGRSWPGASFYKSLKLRWQWRRLKWALAAASEAAQGHEANGVRPGSQEFKTLYDEVARKAQEYSHESGDPIDTLKARLPAFCAIERLANPDAAVPQNRLGLTLGIVMAGVMGSIGIGALIGLGTGIAHWIAHLFA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10062150

Overview

Ecosystem & Geography

Associated Families

Sequences