Scaffold Ga0326728_10052774

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10052774
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5871
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F000540	Metagenome / Metatranscriptome	1043	Y
F001432	Metagenome / Metatranscriptome	696	Y
F104277	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100527742	F000540	GGA	MAKKKAANLPPKLTETEQDLLSHIQDGYQLETDSLGSNPVLRRLKDNEEVRPLSANRNTIKAMERRGLIDPGKGRDPLSIVWRLKKKAN
Ga0326728_100527743	F000072	GAG	MDVERIIDDIEQLQEMFEAPDIRPLSASDISAANRRHDETLAHSPWFRLWQRYGVCCRSESPVLRLGESES
Ga0326728_100527747	F001432	AGGAGG	MSLTKRYLRDGKNRIIGSITSGYSDSTSVVRDEHEQITGRTNERFNIVRDAHGNLVSINSSDPGLLIRRKK
Ga0326728_100527749	F104277	GGAGG	MDANTQIANDLHLLTAPIRFAFRCVLALLFLLAAPLLYAAMPYVCIWADPNSDFSMLALGYIALGPFASAFWTMITGVLPDVYKAHKEGRVFEANHIKGFGLMFVGFFGSLGAEALFLFYLFPIPRESSDIAVNAAHWRSWFAGMGIATFLPVILLLGWRMLKRICAGRQACRWCGETVGAVNLDNVGLCSPCHDAALEEKEVDEEQEAWIRKVKYELHDKAWASDLRRGRREALKWKRRVLSSR