Scaffold Ga0326728_10031966

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10031966
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8795
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 59-55 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010891	Metagenome	297	Y
F023510	Metagenome	209	N
F024018	Metagenome	207	N
F041558	Metagenome	159	N
F042700	Metagenome	157	N
F071899	Metagenome	121	N
F104335	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1003196610	F071899	GAGG	MQARVKLTPRIIARLIVGKPVTVNLPAGTTSLALSTDGNFYEFLRAFHSPWEFTGEETQPRERVIGLFDLIFGSH
Ga0326728_1003196611	F104335	GAGG	MAFWEVTGTVVTEDNNAVTFRTFVPAEELVDTVNEGLDAIFEIENPEVYDEHETTTNGCFAMAHGLATIEPPPAVNVHVEVHV
Ga0326728_1003196615	F023510	GGA	MLKPIDPWPAPGPNSHIFFKVSAVSPNHYGIPPTTFIVEAVNEEAATECVKRAIRMGILLPRGCDGALSPWPTYFQSNALRYLLDGMFVAEELGMLPTLRFFPDPCVRDEWLRYQLSWMARLVEDIQKWWDAMLARPFFTSWFGR
Ga0326728_1003196616	F010891	AGGAG	MTTKKQLTPEQRAMLNEIVNGAFSSIAIHFIGDNLAKGIHYAADATQRTTDVTARAAGTAQVCAIPAAKQAWTGF
Ga0326728_100319663	F024018	AGGAG	LSAHPTTAIDIAKLLAADNVSTADRIWAVDFEAKMPTELITEEDLKCPDCGEVHDPSLENARVVADTITVLGGPDAQVTVDRVREFVLNRELEAGLHMTDFVLTGVKLLAVAEVV
Ga0326728_100319665	F041558	AGGAG	MPPRKNQPKKATAKAKPAPVKPTAKTEPAVTPAVVVPQAPKFTAGDLVRKALQLRQQHTLNAPVATGEALGSSKDPKPTIIEFKVTLSDGTVLHATGKHADVMVRFSNECQEICQTQGLAAYNGPPLTHYTAEEWAARNA
Ga0326728_100319666	F042700	N/A	MDAQKEAYKLLKEHGEQIRHNKHEAWRVNGHLITITKTRTDDRGWLNKLCEIRRCLKMPAEEAFRQTRCNGKGRFTDAPVAQHYVSCAGPAATR