Scaffold Ga0326728_10024631

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10024631
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10880
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019075	Metagenome	231	Y
F028392	Metagenome	191	Y
F057060	Metagenome	136	Y
F082025	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100246315	F082025	AGGAGG	MNSNTIFTSLFGGLLKAADKAAAATINYTQSTVIPGVCNLSRKATLTTGHTLVYVGSKLTDYCTDK
Ga0326728_100246316	F019075	AGGAGG	LRCFQPERALIAREIRAERRRDLDTVLSQIAYGRMTQLPAPSFSLEAQFQISVGKMREDVQRAKDVQTTHIVRWLRS
Ga0326728_100246317	F057060	AGGAGG	MPNHEELCFAPDINKPHQKWSVLGDPERPGRRPIFRHYRQPGEKPDVRTSFGFSELSPVLEHHAAKAGVEYSRISLGRQTGSFDLALEIVQSGLGLEITGDGTWYPAIPWVRDDGFCAVLMRKLIRYEEACHLFGFDIPAAKPSVPKRIKRHLARGRTALFGKEAEVRQLNQYDSVHRVILADGVTSFETAVYDPGPRWPEAWTSGAALASRRGGALLTGHPVQIGDLIQTTGALPSGQIKAHCLIWDVDYDLVVFDIKKELRSWNGEAYFSVLNELHGSPANLDVQTASNLDLAKVRDGKLIQYLSQEFARDVFELMRDDERVKEEIGFYNPDSWVDEDGNLVTDENRWKLRKMYAAGLPAMQFRHCRHAFYRTQMESPRNSDPDRFRIRFREPKDLMTVKPQELAGTAVRKYIFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGRRLQHFAETDRGAVMFVHLGLAASPEGTPGLGKSFNGADFDDSVLALLDPETVAHWKTLQDYPQAVATPTPPMVIDDGDALFDRHPEVERYDQLYVIRMIVDARHGQMGIGCVVNAIVWFNLLWLNRESIVAQLRAMEPSSKVVEAIRWMELDLPKSQMPMIASRLEEIIDSIKMNGKSVQWANAAITEFRNTCPVAPKFLWQGGFQGQGRIPRNRLAIYNEPIPVTTAMDVAHAEWVELFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWHLYNRTREAKKAEFLKAGEDHRGKKVTTEQHAGLAAYLFAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPSRNPDGSVEPVADGILGGPHTLDGFLDMAKAAGATCKYVPITWESERVRADYGYLNLDVIVEDTLVRMAGTTANSANWLGIVDVPDGQYRLEHGLLATEDTTGTTPQPATVTLPAVNGFEQRLKDATLKQQDRRRIEAELKLFQDQVGQRVTVKPAIYHNPKTRKDEPAAEVLLEGTSDPLCWISREHVSAVTQELKGILVSNGNYSLTAICKLPQ
Ga0326728_100246319	F028392	AGGAGG	MAKTVAVIHLPEALRNGNSALVKLAGKIDSFSLVLWQTPESQLKRQIEEDYHAMVFTTRKEVRKYCPKYRYFPGEGILDFSTDCASGQLEPGDLGMPPQPKRGKLCHQCCFFLGEPEEQSPGITLSEILEALVPAT