Scaffold Ga0326728_10022079

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10022079
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11861
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (95.24%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023510	Metagenome	209	N
F024018	Metagenome	207	N
F036061	Metagenome	170	N
F041558	Metagenome	159	N
F064338	Metagenome	128	N
F071899	Metagenome	121	N
F104335	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1002207912	F041558	AGGAG	MPPRKNQSKKATAKAKPAPVKPTAKTEPAAAPEVIAPQAPKFTAGDLVRKALQLRQQHTLNAPVPTTEVPKGPKPMIVEFKVVLSDGTVLHAEGKHADVMVRFSNECQEICQTQGLAAYNGPPMTRYTAQEWAAKNA
Ga0326728_1002207917	F024018	AGGAG	LSAHPTPSLDLAKLLAADNVSTADRIWEVAFEAKMPAELITEEDLKCPDCGVVHDPDIEHARIVSDAITILGGPDAQPSVDRVREHILSQEVGDGLRMTDFILIGVKLLAAAEVV
Ga0326728_1002207918	F036061	GGAGG	VPENWKNPAITQQGIHATETPAGLFSDPPFGHLFAELTDLAAATAAGFRTVLVPPDTPLFCFYCHDTEAPEYRLRRKGGKYVALCHRRGTIEGCWDRDVAPMCEYRDHEGIQCDQVAEWRVAFGKDMLMSTHRCLIHVPPALSDVSEHRVFPI
Ga0326728_1002207921	F064338	AGG	MATLGLIPIPEDLPLFPVPTENVNGLLATSEDLGLTVEEKQELDNYQSALRILGPAAGAVLMCPGNQENVADEDKCPYSSKCPLLRMHKAPADKMCPVERMIVEERFNAWCRELSTDPVLAKESDRVAISDLCWIDLQMQRSLHILSKGDEARLTVTNPKDVHPETFLPISWEKVIHPNVELLVTLQTQRRMILKDWMLTPEQKWKREKAEGKGSGKDIASKQSARADRLRAIKSSNED
Ga0326728_100220793	F023510	GGA	MVKPIDPWPAPGPNSHIFFKVSAVSPNHYGIPPTTFIVEAVNEEAATECVKRAIRMGILLPRGCDGALSPWPTYFQSNALRYLLDGMFVAEEMGTMPTLRFFPDPSIRDEWLRYQLSWRARLVEDLQKWWSAVKARSFFTSWFGR
Ga0326728_100220797	F104335	GAGG	MAFWEVFGTAVTDDNNTVTFRTYVAAEELVDTVNEALDAIFEIENPEIYDEPGTTTNGCFAMGQGLAAVEPPPAVNVHVEVHV
Ga0326728_100220798	F071899	GAGG	MQARVKLTPRIIARLIVGKPVTVNLPAGTSKLSLVMDGKFHEFLRAFSAPEEFEPETSRTEVIGLFDLIFGRH