NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10021532

Scaffold Ga0326728_10021532


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10021532 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12106
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011008Metagenome / Metatranscriptome296Y
F015327Metagenome / Metatranscriptome255Y
F015623Metagenome / Metatranscriptome253Y
F028442Metagenome / Metatranscriptome191Y
F037826Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1002153211F015623GAGGMQQKLITVTLEPDGTSKIDLDGFADNACGKVMDDFRGGDRVLSERRKPEYYNRGRSQELQQGNQ
Ga0326728_1002153213F015327GGAGGMEPNALVECAYELMGSLKEELAERGTVAPAFILLHDRDCEVLAFSPRLFASAEGKAAVARAFRHRARQTGAHGALMGLDSNCFIPDLAAMREANPRLVQAAAGAGIDALIRSGFGKTSEGLSVTLQTPAFHLLVQQLYARGDNSIVFGELRTLDSREVPMEAAGLFSIYGGQHVTRG
Ga0326728_1002153215F037826GGAGGMTLHPLFVAGLLEGFEGTLGEMVGRVENQELNTQLDALRSQVAALRLCIEEPLGRAEKPT
Ga0326728_1002153217F028442GGAGGMTVVEALVDIEKRGRGGVTMSPVAEQEISCRDTQQAVRLLAEAYDHLRKRDHLYADRRRSASLAPPPASVPPD
Ga0326728_100215327F011008AGGAMKRAKDATLVLCLFVVYCVLLSQGLKANAVSAFFGALAAVPLTVHLYRRLWPSPPEKDAGERAPRQLARRDAAEGEKENTEYGL
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