Scaffold Ga0326728_10018496

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10018496
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13722
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010407	Metagenome / Metatranscriptome	304	Y
F054982	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1001849614	F054982	AGGAGG	MDLKPLSPEISELRNVIIASNLASCYLVLELLKSEKNETLNYEKFRSQWIDIYKSTYGIVSKMKPRKSSR
Ga0326728_1001849621	F010407	AGGAGG	MKSLLAVLMGGVVTLFVFSCATVPKEPLAPGELRLSSMDVVGSGVDANASFAVNVFFEAAGHPELKRACFYESREEQLCLDVSPATFGTKRFFQVYLPGMNVGPHTVECYAEYIRDGEMRKTNVIATRISAALSVAPGH