Scaffold Ga0326728_10015890

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10015890
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15518
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F009192	Metagenome	321	Y
F017951	Metagenome / Metatranscriptome	237	N
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1001589010	F003942	GGAG	MLGHRLNPTIHRYEDVELIEVHSEYLECSFMVAKDEWEIGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEMQRQAGHAIYADHLSAMLYGNGLNPARS
Ga0326728_1001589011	F003389	GGA	MQITVWSVAADDDNGTYASVHETESAAYRRLIQLTVDADNKDDVAKAEAFMKADDFDGLDEWIHEDVIEALNTYSVEQQTLDLSALPAPAPTANERALSRRELASVLHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNACDHFCDEEDSPLGPGEIDELCERLNTGFCN
Ga0326728_1001589021	F009192	N/A	DTLMRTQKQLVFYQSILDVLHEPGCPFCRFLKEYQAARLQKHSEREIHHLCNFHTWGLAAVQNALTAAQVFIKLVEEPATNSSDDAICDICKDVFAEEDRRIREFVGCIHRGDVSDWLRTTAVLCIPHGTKLRCQVQPVVAARVDAIVENCRRQLTQELRDLFDRPEADRPGWGSLGRAAEFLVSQRGLHS
Ga0326728_100158906	F017951	GGAG	MAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILVRADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANMVGKLREFAAESIQ
Ga0326728_100158908	F003764	GAG	MQIQLDSPYAQDENPAALLAGAEIEAAHLSRCLKIVRLWSQSSTLPRLRHDEMIEEEQRLANLYAATLFEIGSAFGLRAADELKVRIEAACILDDWECPPAEQGLLFPIPNYSATEANPATARK
Ga0326728_100158909	F042119	GAG	METIIREVNPARLAWGIFDHAKSDYVNEGDIPASYSGDSIAIGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRTFNGTPTNYRDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVRIVASQHEDVFVAQVQLALF