NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10015287

Scaffold Ga0326728_10015287


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10015287 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16002
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007097Metagenome / Metatranscriptome357Y
F010661Metagenome300Y
F016487Metagenome246Y
F021037Metagenome / Metatranscriptome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1001528716F021037AGGAGGMFHLRAPSFYVAIAICLASCAWSSISAARVAQPLRAGQANPFTVEGKVNTLDQNKITLRAEENIIFHVRYDDKTEFKSDDGSPASSKDLRVGLRIRVEG
Ga0326728_100152873F010661GAGGMAKSNGIATAGDFRKLAEASAFEEPARVVLPKTGYGVVLRRPTKFYWALRRTRWPRELREKLDLVGVGVKPELTADETLLLVREDQQMLKEAFVDPKPCLNHGPTQFDPNWLPKEDTEFILKYLRGQVLANGQDLDAFRASEQGHPAGSGADGAMVREDAERDVMSRGGALAH
Ga0326728_100152876F016487N/AMIQGNQTWQLALAQPQKQAYYTVEIPDFAIAIASFTASAQAATMLSGYGVILYGIGLYGT
Ga0326728_100152879F007097AGGAGMSQLILSAIPGFFDLDDSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRAECQFVWMIYSNRAPAPGFVPGQASPPAQSSSQPGSLYNFPGGWDINDATGAVTLRTTYWQNGTEVVNNDGLLKVYAVCLRLSLSSAN
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