Scaffold Ga0326728_10012075

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10012075
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19393
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005824	Metagenome / Metatranscriptome	389	Y
F025415	Metagenome	202	Y
F070789	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1001207511	F070789	AGGAG	VSYSLDASGTLKHRQVTLRRPYHTIVFALMFVTSSIAVFDLYLFASSGFH
Ga0326728_1001207517	F025415	AGGAGG	VLFIEYDVKEDGEIELVALINAVEEDGEDPDGEAWLAWRATHEDKGMGCVGVPPEDLRLMEETEDPEQLLAIVERIILADRTNKEEVSS
Ga0326728_1001207518	F005824	AGGAGG	VSTTRSQLYRFARDLGNIEAVEHGYRRGGLSGAAGGGAEREVRRVIYRQGNRQINHFVRAIGLGPRRR