Scaffold Ga0326728_10011450

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10011450
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20241
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000272	Metagenome / Metatranscriptome	1408	Y
F001878	Metagenome / Metatranscriptome	623	Y
F005523	Metagenome / Metatranscriptome	398	Y
F010257	Metagenome / Metatranscriptome	306	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1001145014	F000272	AGGAGG	MSRTVVERTAEHITESAQQACRATNAVADAIEDGVGAVRCAVKQSGDAAEEFLNDTTQRIQRNPVLTVAATFAIGVAAGTLLGWTLRRR
Ga0326728_1001145021	F010257	N/A	MAKIIEFYVPSSFRKKATKWIPPGQHGKVILFDPPQKKSA
Ga0326728_1001145027	F005523	N/A	CFAAAVLIFFIAGLLYLLRFERVDNLGAYSIPSETGLLIPSGYNN
Ga0326728_100114504	F001878	AGGAG	MSAPSRRPEIRRRRTRAEKIAKLRKRLAAASASTDIDRLTAKLHRAEFTSPGNPLIKSA