Scaffold Ga0326728_10009257

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10009257
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23821
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F023263	Metagenome	210	Y
F041547	Metagenome	159	Y
F041548	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000925711	F041548	AGGA	MNANSIEVQALITFVMPLLIQLAKRSQSAGFAWIDQNKPRICMLTSGVTALLTSMGIQFVHDAHSLTVSWPDTATLVRGLATFLLSVVLQFLAQHALYDGFWRHVVPSPSNQVAAVQL
Ga0326728_1000925712	F041547	N/A	MVNAIEIQALLLGSGGFLGTCMAGVGAYRLFSAATRGVLRVPTCLEKSAESLERMARAVETQNAVSDQVMELKGLLMATREEILKIGGEREQIGRELRLMSRKIETFSCYAMDESK
Ga0326728_1000925713	F017431	AGAAGG	MTKVRTKSEQEFDRTEILRYLNECGLQPVTPKSIIIYLDDCLRPVSLPGVEFHLRYMRDRGWVELGIEKKVGLPEVIRWTRITANGVDEYDQRCVALGEAR
Ga0326728_1000925724	F023263	AGGAGG	MLGNQGLTAAKFDTNIRALRGTVMSLPVSNPSTESDFYVGLPSGFNVVPTGVLAQDVVEPGYPLTSELWLDPNSGNPVNGTLPPSPFISQGRAWGLIINAPEAEVIAADTTIQAEDDVVIADTYGRVTSIRNVTTGNTAYVVGKAKYPPTAANQRIRIQVSLRQTKV