Scaffold Ga0326728_10008244

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10008244
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26018
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y
F023263	Metagenome	210	Y
F041547	Metagenome	159	Y
F041548	Metagenome	159	Y
F048047	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000824414	F023263	AGGAG	MLGNQGLTAAKFDTNIRALRGTVMSLPVSNPSTESDFYVGLPSGFNVVPTGVLAQDVVEPGYPLTSELWLDPNSGNPINGTVPPSPFISQGRAWGLILSAAEAEVIAADTTIQAEDDVVIADTYGRVTSIRNVTTGNTAYVVGKAKYPPTAANQKIRIQVSLRQTKV
Ga0326728_1000824417	F019267	GGAGG	MSASATYTTLYTFRLERRQLVRRIRVDITGLASGANTIPHGIVAPNNPSVGQSPKDEMVLLTSAVAVHRTQAADSTNLYYTVDSGSGTTISVYVTV
Ga0326728_1000824418	F022798	AGGA	MSYTTITQVAGMFPTFTRNGPKGPADTLIQNYIDDVAGEIDAILQRRFQEAYASTGFTAWQGTFSTDQLNLLEKINRYGACAQLAEVFETSGIAAAARVAKGFEDEFRELCNKLNARDADGKPLAQGGDYDYLFDPLAKVETPRPQLGGVAGGDQYPSETSGEGSTNVFKKWDRREF
Ga0326728_1000824421	F048047	GAGG	MPENGIAKANDFKRAVERSNVERVVLPGSGLTVLLCRPPVFAALAMGRAGTQLQARITDAKPEEVRTEDIEAFTQWLTDTLTRLFVQPRFAAAPETDEVGLADILIEDLKFIFRWLRGEVFSAEGGTGVPPVTHGQDGQATSATEDLGRFPSRQRAPSVPGGSGEAQPLPSERTHGAHGHAGVPAGLHRG
Ga0326728_100082443	F041548	AGGAG	MNAQSLQVQALITFVMPLLIQLAKRSQSAGFAWIDQNKPRICMMTSGVTALLTSMGIEFVHAPHSLTVSWPDTATLVRGLVTLVVSVVLQFAAQHVLYDGFWRHVVPAVSNQSSVISHQ
Ga0326728_100082444	F041547	GAG	MVSAIEIQALLLGSGGFLGTCMAGVGAYRLFSAATRGVLRVPASLEKTADSMERMAHAVETQNAVSDQVMELKGLLMATREEILKMGSEREQIGRELRLMSRKIEAFSCYAMEE
Ga0326728_100082445	F017431	AGAAGG	MTKVRTKSEQEFDRTEILRYLNECGLQPVTPKSILIYLDDCLRPVSLPGVEFHLRYMRDRGWVELGIEKKVGLPEVVRWTRITANGVDEYDRRCVTLGEAK