Scaffold Ga0326728_10007928

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10007928
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26755
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (97.22%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F016632	Metagenome / Metatranscriptome	245	Y
F019075	Metagenome	231	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000792823	F005112	AGGAG	MSLVTRYRLFWAALMAALLGLAFWKNSQSYPRKSPLWRLGKAVIDTGLVVLMVIYAPALLLMYVVIWLTSPFRNKIVQVSAAFASILAITHLAGVVFEAVAVLGVFAVDLLSGQVVARMDKRERNKLAKAA
Ga0326728_1000792824	F007120	AGGAGG	MKTLIIVLSVVCAVVAYYFGLRYFSGADLGFTPAKKYVRNLAANLLHTEVTAAREAATTPQATTEQAA
Ga0326728_1000792825	F002761	AGGAGG	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGFKRAKPRESALRWINSHKVIALTATEVVNYSVHGISSPLGVTFALGGTLVNAFMVTFIVPIWCRLSNLESH
Ga0326728_1000792827	F025427	AGGAG	MQPGELEKLLASLGTCPIQKKGLFWRLFKLYWKKLLFIALMLVLPGGLIVLFLCVTVWALNWEKEMTAYFDKAFRQWKKDNDVKCSFDGWLDEDGKERE
Ga0326728_1000792828	F027079	AGGAGG	VIKAFLNLCLILFLDMLAYMVAIVAAAAVAWAAVCGAKWIFAVLKNAAQALRARQRKKEMYAHATR
Ga0326728_1000792829	F016632	AGGAGG	LTGILETFALVEIGSAIGFLASWRNKVLKTKVNFFRQPSNSPSRFDKVLRGKVGRAVTRQDRLRLQLADGLVTLIRKLVQYEAFRQVVRGLALAHSPIRQALRKKGGRTW
Ga0326728_1000792830	F003859	AGGAG	MDELNSPREASRCGMTLAAYLRPVTGLYKSVKLGWNWRRLRWAVAAAAEAAQGHEANGVRPGSQEFKTLYNEVAKKVEEYSRESGDPIDTVKAKLPALCAIERLANPEPAVPQNKLGLTLGIIIAAILGSIGMGALIGLATGIAHWIAHLFA
Ga0326728_1000792831	F028392	AGGAGG	MPNTIAVIHLPEALRDGNSALVKLAGKVDSFSLVLHRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRHFAGEGILDFSTDCASGQLEPGDLGKSPQPKRGKLCHQCCFFLGEPEDQVAGIAVTGSPRHLAPAN
Ga0326728_1000792833	F057060	AGGAGG	MPNHEELYFTPDIAKPYQKWSVLEDPERPGRRPIFRHYRQPGEKPDVRTSFGFSELSPVLEHHAAKAGVEYSRISLGRQTGSFDLALALVQSGLGLEIPEDGTWYPVIPWVRDDGFCAVLMREPIPYEEACHLFGFDIPAAKPSVPKRIKRHLARGRTALFGREAEVRQLNQYDSVHRVILADGVTSFETAVYDPGSRWPEPWTSGAALASRRGGALLTGHPAQIGDLIQITGALPSGQIKAHCLIWDVDYDLIVFDIKKELRAWNGQAYFSVLNELHGSPANLDVQTASNLDLAKVRDQKLIQLLTQEFACDVFELMRDDERVKEEIGFYSPEGWVDEDGTPVLNENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPQNSDPDRFRIRFREPKDLMTVKPQELAGAAVRKYIFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFVSLRNPNASHKESGKLRGRRLQHFAEIDRGAVMFVHLGFAASPDGTPGLGKSFNGADFDDSVLALLDPDIVAHWKTLQDYPQAVATPTQAMVIDDGDTLFDRHPRVERYDDEYVIRMTVDARDGQMGIGCVVNAIVWFNLLWLNRKSVLAQLRAMEPSPKVLEAIRWMELDLAKSQMPMIASRLEEIIDSIKMNGKSVEWANTAITEFRNTCPVAPKFWWQGGFQGQGRIPLRRLGNWNEPIAVTTAMDVAHEEWVEIFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWHLYNRTREAKKAEFLKAGKDHRGKRIANEQEAGLAAYLYAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMAMATGVTRKYVPITWESERVRADYGHLNLDVIVEDTLVRIVGSTPNPASWLGIVDVPDGQYRLEHGLLATEDDGEPAPQPATVALPAVNGFEQRLKDITLKQQDRQRIEAELRLFQSQIGQRVTVKPVTYHNPKTRQDEPAAQVFLEGKLEPLCWISREHLSGVTRELTGILVSNGKYSLTAICTLPN
Ga0326728_1000792834	F019075	AGGAGG	LRYFQPERALIAREFREERRRELNAMLSQLPQRRADRLPAPLPLSLEAQFQRSIVNLREDVQRAKDVQSTHILRWLRS