Scaffold Ga0326728_10006694

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10006694
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30715
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (77.78%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F000885	Metagenome / Metatranscriptome	849	Y
F007488	Metagenome / Metatranscriptome	350	Y
F015120	Metagenome / Metatranscriptome	257	Y
F076450	Metagenome	118	N
F079694	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000669414	F000739	GGAG	MNRLHVWLKGIVAAGISGAAGGVMTGLAAVGIDPAHFNLQAGMGATVRIGTAAALINAVIGVAAYLQKSPLPDSK
Ga0326728_1000669415	F000512	GAG	VSSRVSEASRGIAAEPKGLAAIPRLRPGERRRDSARNDNLQNLVGKIQVVRETHETPDEVTRRLEAAGGRNRFGEPNYRVVWGWNRLAWIGGKFEDRGAHGDLVREIVELRLEPKYPQVNRWHVERWVPPETYGSPREWYANTVETANGASVPALGPYPERGEYEHCFTLQGPKGDFVQLTPTIVEHVARAVEWAKRFPKAKQRGMLYERESREERKYEEWAYTLMDDAAPALHGQPFVTVK
Ga0326728_1000669421	F015120	N/A	MMTTQSLIRGFFRTRYVGLLEEEVARLRGENRALLNSLLGTAGFPPVEFAEPVKPVELPRLRRRSWQQMQMKKEQEAMRG
Ga0326728_1000669425	F000885	AGGAGG	MASAKVVFIGEVAQIAGVGAVVAGVVLSLHHWGAAAALIGGFAAFYVGKKLRGA
Ga0326728_1000669432	F076450	N/A	MRSDSQGRAIQIGRYLNTPLVLNVGVTSASIQLNQNQHYRLWGSVDLFFQFGPTGVTATLNSHPAAAKLDYLHYTDDTNTTLAAIVSSGTGVLFISQIDAQGV
Ga0326728_1000669433	F079694	AGGAG	MPTYQNATPPSALYPGDVGYSWNNEAFPGATTSGSQFALSTPGGYAPETGFAVRWQTIYGSAPSAVNIRLQGAMADVDAEYMDLDTSTNTAGEGRQVTGVQAKFLRIKLYSSTGGSGLTAKILV
Ga0326728_100066944	F007488	N/A	MTLRIREYDEGDLEALRAIHAAQGFPYEFPDLRNPLFLTKLVLAGDESDPAEGKGIAGAALLRLTAEAYLLLDPKRGTPKERWQWLLELHEAARRQAWQRGLEDVHAWLPPEIATKFGRRLARLGWVRDDEWTPYCKRLGTTFELIKGRET
Ga0326728_100066946	F000781	GGAG	MLTVAQLAPLKDRDPYLYETLTKIVSAVNATSQNAGVDPATPSPAPAPIASLQVQAANGWFDLSIADPAASRPGLFYFAESDVTPAFSAPRVHFLGAARNLYLQLGNQTLYWRAYSQYIGSQPSAPVSFGSPPIAVVGGGASGPAPLPSSGSGTLPNGLLRGGNGFGTPTGARIVKQTIL