Scaffold Ga0326728_10006357

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10006357
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31900
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028926	Metagenome / Metatranscriptome	190	N
F043255	Metagenome	156	Y
F062584	Metagenome / Metatranscriptome	130	N
F074603	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000635719	F028926	N/A	MRPRRETKPGPPFLLNSVDRFGRQIAPAVLSVSMEIGPRALAYAQNLIGDPALAMNYFEEAAASVSAAIEEKKASGAPAIRNVAGYLFRTFIRMVDDAKHKEKIREESLKESGEARIPLTEEARVETAVLLNEVMDACDRASREVIVLRLEGFTWKEIGKRFDISSHAAEARFSKALDHARKMLKIRRRKG
Ga0326728_1000635723	F074603	GAGG	MFQFPTPVPTGDIPPPTCFEQFILCLALVAISTALLSFFLPRPLFCKLFKIAFPFMPDRLEDFDEKD
Ga0326728_1000635724	F043255	GGAGG	MKKTRKPKVVMVGNTPITPISAKEQREIKKRIEKRHEQLRKRYPEVHGKVVDFINHSVEDGTLYVSVRFKDKTNFSVRYSCGMFVVGADVSDMSAGDLEIIREYMKPIPH
Ga0326728_1000635726	F062584	GGAG	MTEIDDPEVLRREIRRMLEKVTDRGSLIFYQWMVRRVLANYPIPGDVELRALHQAFIRMQAAFRAKKRPIKEDMELVAKWTEGDAESMGRALGRAVKFFREKRGMSRLQLAKKARLPIRAILAIERGRVFDLSPVIDNLTMGLSVKAGELTDKLLDFEKDDKSPTRKG