NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10005874

Scaffold Ga0326728_10005874


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10005874 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33805
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (48.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038792Metagenome165N
F049187Metagenome / Metatranscriptome147N
F057853Metagenome135N
F063287Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100058742F057853N/AMSKLEQFVLFHLFKGPALLLAAALAGGAAAGALQHETKRIRGLVQSRAKLDLELIQYNSHFLSTNSSVESVLSAYQIPCRALTNDPVQLELDYEAAKKLERVGLLVQAAEFENGRLTVTLKDYPARK
Ga0326728_1000587422F063287AGGAVSSASRNQQFTGVNWNGTSTRPIFALVRTQSGERPLGAEGYDLLGHEGRHAAYGDRKLFRHAIDSGIDQANELLFPGLVPTMGAGLLAIWLVRKSGEQLTFKDTLKIKELILSQPELLNDWCEVENDLFNPENRSYRVFAEPDPAVLKRIVKAATQS
Ga0326728_100058743F038792AGGAMNTPSRKQFMELITRFKLAIEATKEALASEYEQVTRQDAEARRPITPLLDFCMQRAGTRERAEAIFNHVLKNSRISYWPNPEVPPHLRDNQEIKEVCSKHFIVPVKATEHLLVLCGCNPHDSEGPGAIWQKLAGAKPPFPVVALSEPERIRKALTQFA
Ga0326728_100058748F049187N/AMKSNALRAQLAAVAAIVFLALVAVAPWVAGSHVLKPVSVKWNQIIRRKDGLLVEEAGLEAKIKEFQNMEEKRKANELFQKNIDQSGLDSMQGLINNGKYPIYSFRTLQLDSKETSFSFVTQYNTLGQLLTDLWNTFQFVELSSLVMKPSPNKPEEDVVATLTVRLPRAQNR
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