Scaffold Ga0326728_10005376

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10005376
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36096
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003703	Metagenome / Metatranscriptome	473	Y
F006594	Metagenome / Metatranscriptome	369	Y
F011008	Metagenome / Metatranscriptome	296	Y
F012405	Metagenome / Metatranscriptome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000537614	F011008	GGAG	MKRAKAATLLVCLFVVYCVLLSQGLKASAASAFFGALAAVPLTVHIYRRLWPLPIEWDGGERGLHRHASRDAPEAAFAPGKVDARIWHSD
Ga0326728_1000537626	F012405	GAGG	MARSKESLLNRILRRGEDAGLLVSAAALILVEAGYVAWLERLPTLPSPAHPVGFLDPPPWYEHPRVEVTLLLTVLGGVIAWAALGVCGLMRNRSAGAAADMRRATVHKRLKTATFYAVVVGADLLLTQFLHT
Ga0326728_1000537627	F006594	GGCGG	VKTMVPQVEITPEHALHLVRSRMHPKIPLDSGIQTPSATRIVEGFRARFDKACDVGVWKRLSNAVLEPANRFDVKTRRQLKQEAIILGTLGLTSLGLALYFNLNAIAR
Ga0326728_1000537632	F003703	AGGAG	MFLHRVKMNWKKHQTLTLTILLVALARIVLENVFGDGLFSDYATLKFGVVVMAATLAWAFLKTGWELGTFHYKRLCTFIGALRKFCRDYWSKTAAV