Scaffold Ga0326728_10005136

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10005136
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37511
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (88.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F019075	Metagenome	231	Y
F039911	Metagenome / Metatranscriptome	162	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000513611	F003859	AGGAG	MEEFIPKKGSMAEGVRVTDYLLPVTSLYKSIKLGWQWRHLKWAVAAASEAAQGHEANGIRPGSQEFKTIYNEVAKKAQDYSRESGIPIDTLKAKLPALCAIERLANPEAAVPQNRLGLTLGVVIASGLGSIGIGVLIGLGTGMAHWIAHLFA
Ga0326728_1000513612	F016632	AGGAGG	LTGILEVFALAEIGSGIGFLASWRNKVLKAKVNYFRQSNSRPSPFDKILRSKAGRAYTRQDRLRLQLADGLVNVIRKLVQYEAFHLIVRGLALAHSPMRQALRKKGGRSW
Ga0326728_1000513615	F002761	AGGTGG	MVFTPSSTGSFTAGAVFWSMVWAGLGKLNELARFVGFKRAKPRESALRWINSHKVIALTATEVVNYSVHGISSPLGVTFALGGTIVNTLMVAFVVPIWCRLTRLESRL
Ga0326728_1000513617	F039911	AGGAG	MKYMIAALLAVVVAIAGYFGIRHLTQKDLGFTPVKRYASKLATTLIHTETAAAREAGVSPAT
Ga0326728_1000513618	F005112	AGGAG	MSLVAKYKLFWAGCIAALCGLAFWKNSKSYPRKSRLWRLGKSVIDTGLVLLMVLYAPALLLMYVVIWLTSPFKYKIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAADLLTGQVVARMDRRNRKEVARAA
Ga0326728_100051368	F019075	GGAGG	LRCFQPERALIAREIREERQRELDSVLSQIAYGRMTQLPARSLSLEAQFQISVSKMREDVQRAKDVQTTHILRWLRS
Ga0326728_100051369	F057060	AGGAGG	MPKHEELYFTPHLDKPHQKWSILEDPECPSAGTIRRHYRQPREKPDVKQSFGISEVSPVLEYYAARAGIEYSRVSLGHQTFSFDLALALLRSPLGMETSDGQVWRPVIPWVRDDGFCAVLMREAIPYQEACHLFGFDIPAAKPSVPKRIKRHLARGRTALFGKEAEVRQLNQYDRVHEAILADGATSFSTAVYDPGPRWPEAWTSGAALASRRGGALLTGHPVQIGDLIQITGALPTGQIKANCLIWDVDYDLVVFDIKKELRSWNGEVYLSVLNELHGSPANLDVQTASNLDLAKVRNGKLIQNLSQEFARDVFELMKHDERVKEEIGFYNPEGWVNDDGNPVMNENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPQNSNPDRFRIRFREPKDLMTVQPQELAGAAVRRYIFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGRRLQRFAEIDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALLDPEIAAHWKTLQEYPLLQAAPTQAMVIDDGDALFDRHPEVERYDTLFVERMIVDAKHGQMGIGCVVNAIVWHNLLWLNRGSILAELRAMEPISKVLEAIHWMEHDLPKSQMPMIASRLEEIIDSIKMNGKSVEWANAAITEFRNACPVAPKFWWQGGFQGEGRIPRHRLGSYNEPIQVTTAMDIAREEWVELFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREAKKAEFLKTGEDHRGKKVTSEQDAGLAAYLFAEEDIHNRIKASGMYLEIYAELAKLVFDRELSLEPPRNPDGSVKPVADGILGGPHTLDGFLDMARAAGVTRKYVPITWESDRVRADYGHLNLDVVVEDTLVRLVGSTPNSASWLGIVDIPDGQYRLEHGLLATGDDDETPPQQTTLALPAVNGFEQRLKDMTLKQQDRQRIEAELKLFQAQVGQRVTIKPVTYHNPKTRQDEPAAEVFVQGKSEPLCWISRAHVSAVTRELTGILVSNGKYSLTAVCTLPQ