Scaffold Ga0326728_10004738

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10004738
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39659
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (62.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001289	Metagenome / Metatranscriptome	730	Y
F033558	Metagenome	177	Y
F070364	Metagenome	123	Y
F097850	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100047381	F097850	N/A	GPRRRIELLAGWSAMAEQVSQRNVASAEVLFETALGLVYGGEMFHIQGFVVERLGGVAYLYRVAAMA
Ga0326728_1000473824	F001289	GAGG	MKNPYDVLRMKEQELTRIRKEIDALRIAARLLGAEDPGATQGEAQPALSRVVEMP
Ga0326728_1000473835	F070364	N/A	MNCLPTTNDYRPTTEKSYNRRVNAPASPKPAADNEHSDNKHKRHHAIYAAEATGLLLMAVLLLILTILRYWRYIPWSAR
Ga0326728_100047385	F033558	AGG	MSENNSRPTPRVLLPLIEFIDRSLVAERKWTEAEFRCRDTALESQARADNLRHEAGDAKIQKASEVLDYRLEEMNNFRAQINQERAEYLRREMYEREHANLAERVKNLEIVRGEQSGRTAAYASMVGIVVVMVQIVLHFWK